Shopify Payments Gateways vs. Third-Party Payment Gateways: Pros and Cons

Shopify Payment Gateways

Choosing the right Shopify payment gateways for your Shopify store is a critical decision that directly impacts your business. Shopify offers its native payment solution, Shopify Payments, while also allowing integration with various third-party payment gateways. Let’s explore the pros and cons of each to help you make an informed decision:

Shopify Payments:


  1. Seamless Integration: Shopify Payments seamlessly integrates with your Shopify store, streamlining the setup process.
  2. Unified Dashboard: Manage your orders, payments, and store analytics in one unified Shopify dashboard for a comprehensive overview.
  3. Reduced Transaction Fees: Opting for Shopify Payments can result in lower transaction fees compared to some third-party gateways, especially if you’re on a higher Shopify plan.
  4. Enhanced Security: As a native solution, Shopify Payments adheres to robust security standards, ensuring the safety of customer payment information.


  1. Limited Availability: Shopify Payments is not available in all countries, limiting its use for businesses operating in regions where the service is unsupported.
  2. Chargeback Limitations: The chargeback process is controlled by Shopify, potentially limiting your ability to dispute chargebacks compared to some third-party gateways.

Third-Party Payment Gateways:


  1. Global Reach: Third-party gateways often support a broader range of countries, enabling international businesses to cater to a more diverse customer base.
  2. Diverse Payment Methods: Third-party gateways may offer a wider array of payment options, allowing customers to pay using their preferred methods.
  3. Flexible Integration: Businesses can choose from various third-party gateways to find one that aligns with their specific needs and preferences.


  1. Additional Transaction Fees: Using third-party gateways may incur additional transaction fees on top of Shopify’s fees, potentially impacting your overall profitability.
  2. Separate Dashboards: Managing payments may require navigating between different dashboards, creating potential challenges for tracking and analyzing your business data.
  3. Security Concerns: While reputable third-party gateways maintain high-security standards, the integration introduces an additional layer, potentially raising security concerns.


The decision between Shopify Payments and third-party gateways depends on your business’s unique needs and priorities. If simplicity, reduced fees, and integrated management are critical, Shopify Payments might be the ideal choice. For businesses seeking global reach, diverse payment methods, and flexibility, third-party gateways offer a broader spectrum of options. Carefully evaluate your specific requirements and consider the trade-offs to select the payment solution that best aligns with your Shopify store’s goals and customer expectations.

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